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sample outliers
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4
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arrayQualityMetrics with DESeq2
arrayqualitymetrics
deseq2
sample outliers
9.4 years ago • updated 9.3 years ago
rachelwright8
▴ 10
0
votes
3
replies
3.9k
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Handling outliers in DESeq2?
deseq2
sample outliers
updated 7.0 years ago by
Michael Love
42k • written 7.0 years ago by
supremerulersuraj
• 0
3
votes
3
replies
1.6k
views
How to define an outlier array from PCA?
microarray
PCA
outliers
sample outliers
limma
updated 8.3 years ago by
Aaron Lun
★ 28k • written 8.3 years ago by
serpalma.v
▴ 60
3 results • Page
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Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
• 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Answer: GSVA function
by
Robert Castelo
★ 3.3k
Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …
Votes
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DESeq2: add annotations (from data frame) to DESeqDataSet
Add new columns to DESeqResults from text file by matching rownames.
DESeq2: LRT or WALD guidance
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